1.0.2

• [Database] Fixed an issue with migrating single end sequence files to the new SequencingObject model in cases where samples with single files had been merged. IRIDA installs should skip directly to v1.0.2 from 1.0.0alpha-10 to avoid database update problems.

1.0.1

1.0.0 to 1.0.1

• [UI]: Fixed a bug where exporting to Galaxy from the cart was not working.

1.0.0

1.0.0-alpha10 to 1.0.0

• [UI]: Fixed a bug where project filtering on the projects table excluded projects that did not have an organism
• [Developer]: Make all of the responses when working with samples have the same set of links.
• [UI]: Show the version of the pipeline on the pipeline details page.
• [Developer]: Fixed a bug where updating project modified time on addition of a sample caused the uploader to fail.
• [UI]: Help links and contact information shown on page are now configurable.
• [UI]: Show the current version of IRIDA in the UI under the 'Help' menu.
• [Developer] Change integration tests to use Liquibase instead of Hibernate hbm2ddl, to more closely resemble production environment.
• [Developer] Change service-layer integration tests to use MySQL database instead of in-memory database
• [UI] Added description box for describing a new analysis before submission to a pipeline.
• [UI] Added password restriction list when creating or editing user info, and when resetting a password.
• [Developer] Changed organization of sequencing data to make it easier to add other types of sequencing objects and automate tasks on data upload.
• [UI/Workflow] Added per-project option to automatically assemble uploaded sequence data.
• [UI]: Added active tokens count to OAuth client list page.

1.0.0-alpha10.2

• [Developer] Fix a bug where updating project modified time on addition of a sample caused the uploader to fail with a race condition.

1.0.0-alpha10.1: Changed GALAXY_ADMIN_USER to GALAXY_USER for example env variable con…

• [UI]: Fixed a bug where project filtering on the projects table excluded projects that did not have an organism

1.0.0-alpha10

1.0.0-alpha9 to 1.0.0-alpha10

• [Developer]: Upgraded to angularjs 1.5.0.
• [Developer]: When building the VM, don't install a tool more than once (even if multiple workflows depend on the tool).
• [UI]: Fixed a bug where the Send to Galaxy button was enabled on the samples table even if you didn't come to IRIDA through a Galaxy.
• [UI]: Fixed a bug where uploading a reference file with IUPAC ambiguous bases was reporting a very bad error message, and was inconsistently applied in the different places where you can upload reference files.
• [Developer]: Database initialization for integration tests is now 1) managed by liquibased to match our production environment, and 2) runs much more quickly by loading up a pre-populated database rather than building the database by changesets from the beginning of time.
• [UI]: Removed the bottom footer and moved links into the Help menu.
• [UI]: Fixed a bug where sorting users on the users table didn't actually sort the users correctly.
• [Developer]: Added support to Galaxy integration to allow different sets of states, (hopefully) allowing the use of newer versions of Galaxy that we prescribe.
• [UI]: New feature: user group management for creating collections of users to apply permissions to projects.