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10 Open 28 Closed
10 Open 28 Closed
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Issues list

Documentation is out of date for locidex bug Something isn't working
#116 opened Sep 18, 2024 by mattheww95
Use RASUSA for downsampling nanopore reads enhancement New feature or request
#115 opened Sep 17, 2024 by mattheww95
--skip_metagenomic_detection should default to true enhancement New feature or request
#108 opened Sep 6, 2024 by mattheww95
Tokenize species tag on output from Mash and Kraken2 enhancement New feature or request
#100 opened Aug 19, 2024 by mattheww95
Support for uncompressed and compressed fastq/fasta bug Something isn't working
#60 opened Apr 10, 2024 by apetkau
Add clean up directive to CheckM enhancement New feature or request
#53 opened Mar 22, 2024 by mattheww95
Reduce temporary file usage in the contaminant removal step enhancement New feature or request
#24 opened Feb 7, 2024 by mattheww95
Update Bakta to v1.9.2 to manage skip amrfinder plus bug bug Something isn't working
#21 opened Feb 6, 2024 by mattheww95
Add option to specify SRAs as input enhancement New feature or request
#17 opened Dec 8, 2023 by mattheww95
Down sampling of genomes with uneven coverage should flag be a quality flag enhancement New feature or request
#13 opened Nov 22, 2023 by mattheww95
@mattheww95
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