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bugfix --> typo escape
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albertobrusati committed Jan 20, 2022
1 parent 0c6db93 commit e037516
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Showing 3 changed files with 23 additions and 7 deletions.
2 changes: 1 addition & 1 deletion library/extaxsi/ExTaxsI_library.py
Original file line number Diff line number Diff line change
Expand Up @@ -2128,7 +2128,7 @@ def db_creation(text_search = None,

if counter_query == 0:
print("\nNo results found with this query: %s\nMaybe a typo?\n" % text_search)
continue
break
else:
print("\nThe number of sequence found is: {0}{2}{1}".format(color.GREEN,
color.END,
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3 changes: 2 additions & 1 deletion library/setup.cfg
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@@ -1,3 +1,4 @@
# Inside of setup.cfg
[metadata]
description-file = README.md
long_description = file: README.md
long_description_content_type = text/markdown
25 changes: 20 additions & 5 deletions library/setup.py
Original file line number Diff line number Diff line change
@@ -1,19 +1,34 @@
from distutils.core import setup
with open("README.md", "r", encoding="utf-8") as fh:
long_description = fh.read()

setup(
name = 'extaxsi',
packages = ['extaxsi'],
version = '0.3.3',
version = '0.3.7',
license='MIT',
description = 'Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations',
long_description=long_description,
long_description="""ExTaxsI functions \n
Library overview \n
ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks: \n
* load_configurations() - **mandatory before using ExTaxsi functions** - setting NCBI API key to allow data query \n
* db_creation() - create FASTA, accession with taxonomy or enriched database \n
* taxonomyID_converter() - convert taxid into organism taxonomy and viceversa \n
* sunburst_plot() - create sunburst plot \n
* scatterplot() - create scatterplot \n
* worldmap_plot() - create worldmap plot \n
In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided. \n
Input files used are available in the **examples** directory. \n
For any doubt, please write to [email protected]""",
long_description_content_type="text/markdown",
author = 'alberto brusati',
author_email = '[email protected]',
url = 'https://github.com/user/extaxsi',
download_url = 'https://github.com/user/extaxsi/archive/refs/tags/v_03.tar.gz',
download_url = 'https://github.com/qLSLab/ExTaxsI/archive/refs/tags/v_03.tar.gz',
keywords = ['bioinformatic', 'ncbi', 'molecular data', 'visualization', 'taxonomy', 'converter'],
install_requires=[
'biopython',
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