Update Cache #91
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| name: Update Cache | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| # Weekly, monday and thursday | |
| - cron: 0 0 * * 1,4 | |
| jobs: | |
| update-cache: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Create conda environment | |
| run: conda create --quiet -c conda-forge --name shpc spython | |
| - name: Derive BioContainers List | |
| run: | | |
| export PATH="/usr/share/miniconda/bin:$PATH" | |
| source activate shpc | |
| pip install -r .github/scripts/dev-requirements.txt | |
| python .github/scripts/get_biocontainers.py /tmp/biocontainers.txt | |
| head /tmp/biocontainers.txt | |
| - name: Update Cache Action | |
| uses: singularityhub/container-executable-discovery@main | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repo-letter-prefix: true | |
| listing: /tmp/biocontainers.txt | |
| namespace: quay.io/biocontainers | |
| dry_run: ${{ github.event_name == 'pull_request' }} | |