v7.1.3

What's Changed

• Auto versionining and release by @alimanfoo in #309

Full Changelog: v7.1.2...v7.1.3

v7.1.2

What's Changed

• Fix Af1 genome features by @alimanfoo in #307

Full Changelog: v7.1.1...v7.1.2

v7.1.1

Full Changelog: v7.1.0...v7.1.1

v7.1.0

Highlights

• Adds Ag3.fst_gwss() and Ag3.plot_fst_gwss() functions for calculating and plotting Fst across a contig.

What's Changed

• Implement plot_fst_gwss function by @sanjaynagi in #294
• Fix docstrings by @alimanfoo in #304

Full Changelog: v7.0.5...v7.1.0

v7.0.5

What's Changed

• Fix WGS data catalogs for Ag3.0 release to use Sanger S3 by @alimanfoo in #303

Full Changelog: v7.0.4...v7.0.5

v7.0.4

What's Changed

• Avoid broken ipinfo by @alimanfoo in #300
• Try Python 3.10 by @alimanfoo in #301

Full Changelog: v7.0.3...v7.0.4

v7.0.3

What's Changed

• Fix haplotype network grey pie segments for countries with a space in the name by @alimanfoo in #298

Full Changelog: v7.0.2...v7.0.3

v7.0.2

Fix version metadata.

Full Changelog: v7.0.1...v7.0.2

v7.0.1

What's Changed

• adds title to plot_haplotype_clustering function by @sanjaynagi in #296
• Add release notes for Pv4 and Pf7 by @kathryn1995 in #297

Full Changelog: v7.0.0...v7.0.1

v7.0.0

Highlights

• Adds H1X statistics for detecting shared selective sweeps, via Ag3.h1x_gwss() and Ag3.plot_h1x_gwss() functions.
• Adds Ag3.plot_haplotype_clustering() to visualise hierarchical clustering of haplotypes from a given genome region.
• Adds Ag3.plot_haplotype_network() to visualise a median-joining network of haplotypes from a given genome region.
• Adds the Pv4 and Pf7 classes for accessing data in the Plasmodium releases.
• Add Pv4.sample_metadata() and Pf7.sample_metadata() functions for accessing metadata.
• Add Pv4.variant_calls() and Pf7.variant_calls() functions for accessing variant calls.
• Add Pv4.genome_features() and Pf7.genome_features() functions for accessing the genome feature annotations.
• Add Pv4.genome_sequence() and Pf7.genome_sequence() functions for accessing the reference genome sequence.

What's Changed

• Implement H1X statistic for detecting shared selective sweeps by @alimanfoo in #283
• Implement interactive haplotype cluster plot by @sanjaynagi in #285
• Haplotype median-joining networks implementation by @alimanfoo in #287
• Af1.0 by @leehart in #289
• v7.0.0 release prep by @leehart in #292

New Contributors

• @sanjaynagi made their first contribution in #285

Full Changelog: v6.1.1...v7.0.0