v13.1.0

What's Changed

• Add parameters to the Anopheles pca function to allow better handling of outliers by @alimanfoo in #616
• Support fractions for max_missing_an and min_minor_ac parameters when accessing biallelic SNPs by @alimanfoo in #617

Full Changelog: v13.0.4...v13.1.0

v13.0.4

What's Changed

• Update switcher.json by @leehart in #602
• Pass through chunks when computing biallelic SNP calls by @alimanfoo in #613
• Handle dask distributed progress by @alimanfoo in #614
• More options for automatic sizing of chunks by @alimanfoo in #615
• Fix typos in docs by @leehart in #610

Full Changelog: v13.0.3...v13.0.4

v13.0.3

What's Changed

• Upgrade scikit-allel minimum version 1.3.13 to resolve issues with running large PCAs on a distributed cluster by @alimanfoo in #605

Full Changelog: v13.0.2...v13.0.3

v13.0.2

What's Changed

• Upgrade scikit-allel to resolve issues running large PCAs on a distributed cluster by @alimanfoo in #603

Full Changelog: v13.0.1...v13.0.2

v13.0.1

What's Changed

• Handle missing CNV DRCs in similar way to missing CNV HMM by @leehart in #599

Full Changelog: v13.0.0...v13.0.1

v13.0.0

Release Notes

Python 3.9 no longer supported

Please note that Python 3.9 is no longer supported from this release.

What's Changed

• Drop support for Python 3.9, add support for numpy 2.x by @alimanfoo in #590
• Update GCS bucket to use single-region as default by @ahernank in #593

Full Changelog: v12.0.1...v13.0.0

v12.0.1

What's Changed

• Pin dependencies to resolve installation problems by @ahernank in #587
• Update switcher.json by @leehart in #581

Full Changelog: v12.0.0...v12.0.1

v12.0.0

What's Changed

• Anopheles diplotype clustering - fix n_snps in title by @sanjaynagi in #561
• Add defaults for min_minor_ac, max_missing_an by @leehart in #569
• Update switcher.json by @leehart in #574
• Add terms-of-use info to sample_metadata() by @leehart in #560
• Fix and improve plotting pairwise average fst by @alimanfoo in #579
• Add clip_min parameter for Fst GWSS analyses by @alimanfoo in #580
• Pandas FutureWarning: Setting an item of incompatible dtype is deprecated by @jonbrenas in #535
• Skip sample sets missing CNV HMM by @leehart in #575

Full Changelog: v11.0.0...v12.0.0

v11.0.0

What's Changed

• Option to annotate upper-right corner of Fst plots with Z scores. by @jonbrenas in #538

Full Changelog: v10.2.0...v11.0.0

v10.2.0

What's Changed

• Add sequence QC metadata to sample_metadata() by @leehart in #549

Full Changelog: v10.1.0...v10.2.0