reverted to old commit

phac-nml · May 31, 2024 · 14558a9 · 14558a9
1 parent e354510
commit 14558a9
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/modules/local/report.nf b/modules/local/report.nf
@@ -804,7 +804,7 @@ def table_values(file_path, header_p, seperator, headers=null){
     def converted_data = [:]
     def idx = 0
     def lines_read = false
-    def missing_value = ''
+    def missing_value = 'NoData'
     def default_index_col = "__default_index__"
     file_path.withReader{
         String line

diff --git a/tests/functions/report.nf.test b/tests/functions/report.nf.test
@@ -24,7 +24,7 @@ nextflow_function {
             }
         }
         then{
-            assert function.result == ['0':['header1':'', 'header2':'stuff2', 'header3':'stuff3']]
+            assert function.result == ['0':['header1':'NoData', 'header2':'stuff2', 'header3':'stuff3']]
             assert function.success
         }
     }
@@ -45,7 +45,7 @@ nextflow_function {
             }
         }
         then{
-            assert function.result == ['0':['header1':'', 'header2':'', 'header3':'stuff3']]
+            assert function.result == ['0':['header1':'NoData', 'header2':'NoData', 'header3':'stuff3']]
             assert function.success
         }
     }
@@ -88,7 +88,7 @@ nextflow_function {
             }
         }
         then{
-            assert function.result == ['0':['header1':'', 'header2':'stuff2', 'header3':'stuff3']]
+            assert function.result == ['0':['header1':'NoData', 'header2':'stuff2', 'header3':'stuff3']]
             assert function.success
         }
     }
@@ -297,7 +297,7 @@ nextflow_function {
         }
         then{
             assert function.success
-            assert function.result == ['0':['header1':'', 'header2':'', 'header3':'']]
+            assert function.result == ['0':['header1':'NoData', 'header2':'NoData', 'header3':'NoData']]
         }
     }
 }