updated gaurd conditions

phac-nml · Sep 13, 2024 · 296b8d5 · 296b8d5
1 parent bb420d2
commit 296b8d5
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/modules/local/locidex_select.nf b/modules/local/locidex_select.nf
@@ -53,7 +53,7 @@ process LOCIDEX_SELECT {
     def report_name = "${meta.id}_${params.locidex.db_config_output_name}"
     output_config = task.workDir.resolve(report_name)
 
-    if(params.override_allele_scheme && params.locidex.allele_database == null){
+    if(!params.override_allele_scheme && params.locidex.allele_database == null){
         error("Allele calling is enabled but there is no allele scheme or locidex allele database location present.")
     }
 

diff --git a/subworkflows/local/locidex.nf b/subworkflows/local/locidex.nf
@@ -16,7 +16,7 @@ workflow LOCIDEX {
     paired_species = top_hit.join(contigs)
     paired_dbs = Channel.empty()
 
-    if(params.override_allele_scheme && params.locidex.allele_database == null && !params.skip_allele_calling){
+    if(!params.override_allele_scheme && params.locidex.allele_database == null && !params.skip_allele_calling){
         error("Allele calling is enabled, but no locidex database directory has been configured.")
     }