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fixed typos
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mattheww95 committed Jul 22, 2024
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [0.3.1] - 2024-07-22

### `Fixed`

- Fixed spelling issues issues in config values. See [PR XX](XX)

## [0.3.0] - 2024-07-04

### `Changed`
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10 changes: 5 additions & 5 deletions nextflow_schema.json
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"properties": {
"dehosting_idx": {
"type": "string",
"description": "Minimpa2 index for dehosting and kitome removal",
"description": "Minimap2 index for dehosting and kitome removal",
"pattern": "^\\S+$",
"exists": true,
"format": "file-path"
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},
"skip_metagenomic_detection": {
"type": "boolean",
"description": "For samples to be analyzed as isolates"
"description": "Force samples to be analyzed as isolates"
},
"skip_staramr": {
"type": "boolean",
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"ec_opid": {
"type": "number",
"default": 90,
"description": "Minimum percent identity to determine O antigens prescence",
"description": "Minimum percent identity to determine O antigens presence",
"minimum": 0,
"maximum": 100
},
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"ec_hpid": {
"type": "number",
"default": 95,
"description": "Miniumum percent identity to determine H antigens prescence",
"description": "Miniumum percent identity to determine H antigens presence",
"minimum": 0,
"maximum": 100
},
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"$ref": "#/definitions/other"
}
]
}
}

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